Using Jupyter Notebook to Build Up Your Bioinformatics Project
| Dates: | 20 June 2024 |
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| Times: | 11:00 - 12:00 |
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| What is it: | Workshop |
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| Organiser: | Faculty of Biology, Medicine and Health |
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| Who is it for: | University staff |
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| Speaker: | Dr Stepan Denisov |
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In response to community feedback and a survey conducted in February, we are launching a series of bioinformatics training sessions.
The first workshop, "Using Jupyter Notebook to Build Your Bioinformatics Project," provided by Stepan Denisov, is designed to introduce core principles and best practices for organising bioinformatics projects using Jupyter Notebook.
Lecturer: Dr Stepan Denisov Research Associate - Division of Evolution & Genomic Sciences
Duration: One hour, including a Q&A session
Format: 1 hr Lecture with Q&As (In person)
Requirements: Basic Python programming and Bash scripting
Training Agenda:
- Introduction
- Core principles of bioinformatics project organisation
- Why choose Jupyter Notebook?
- Objectives
- Best practices and culture of using Jupyter Notebook in bioinformatics research
- Project Organization
- Best practices for any computational biology project
- Jupyter Notebook vs Traditional Scripts
- Typical Bioinformatics Project with Jupyter Notebook
- Structure and tips
- Jupyter Notebook Bioinformatics Project Example
- Summary and Conclusion
- Useful Links
- Q&A Session
This workshop is ideal for researchers and students in the field of bioinformatics who are looking to enhance their project management skills using Jupyter Notebook. Whether you are new to Jupyter Notebook or looking to refine your skills, this session will provide valuable insights and practical tips.
To register for the workshop, please use this link.
For any questions or further information, please contact lijing.lin@manchester.ac.uk stepan.denisov@manchester.ac.uk
Hosted by: FBMH Bioinformatics Steering Group /Computation Biology@Manchester Community
Speaker
Dr Stepan Denisov
Role: Research Associate
Organisation: Division of Evolution & Genomic Sciences
Travel and Contact Information
Find event
Theatre A
Simon Building
Manchester
